Originally Posted by Minceraft
Only problem with the editor is that each project folder has program files for the editor, which must be removed prior to publishing online. Or things like Minion will download the file into the wrong folder :/
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One option is to use the Git or Subversion features of the site and publish from there. Not sure about LuaDevelopmentTools, but a lot of IDEs have built-in Git and/or SVN support (or you could use it directly from CLI or a GUI). It takes a little bit to get setup, but once you do I find it's much easier to publish changes than manual zip and upload.